rs26908292 SNP Detail

Summary

• ID
  rs26908292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCGGAATA GAGTTTCTCT TCTCCCTTGT CCTTCCCGAG
  ATACCACCTG ACCCATTGTG AAAGTCACAT CATGAAACAG GACCTGTCAG AGAAGGGAGA
  Y
  GCTGAAGAAA ACCGGGATGG CACCATTCAG TCCCTGGAGG CCTCAGGAGC ACTGGCAGTG
  GAGCCAGGCA ATAAGGAGGG GGTTTTCTAA GTTTAGTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166929	NES08482697	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	T		C		C	T		C
ss132360152	ENSMUSSNP5141879	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss323731053	CHEV_11_69497512	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26908292					SNP	C	C	C	C	C	C	T	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166929	NES08482697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1717 bp distal
Rr450068	regulatory region 450068	1952 bp distal
Rr450069	regulatory region 450069	1436 bp distal
Rr450070	regulatory region 450070	1047 bp distal
Rr450071	regulatory region 450071	within coordinates
Rr450072	regulatory region 450072	1239 bp proximal
Rr450073	regulatory region 450073	1534 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1926 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	313 bp upstream
Tssr102520	transcription start site region 102520	345 bp upstream
Tssr102521	transcription start site region 102521	386 bp upstream
Tssr102522	transcription start site region 102522	479 bp upstream
Tssr102523	transcription start site region 102523	541 bp upstream
Tssr102524	transcription start site region 102524	1927 bp upstream
Tssr108780	transcription start site region 108780	1931 bp upstream
Tssr108781	transcription start site region 108781	1265 bp downstream
Tssr108782	transcription start site region 108782	1327 bp downstream
Tssr108783	transcription start site region 108783	1510 bp downstream
Tssr108784	transcription start site region 108784	1527 bp downstream