rs26908293 SNP Detail

Summary

• ID
  rs26908293
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTTGGCA TCTTGTTCTT GAGTCTTCAG ATTTGCCTCT
  CCACCCCCGT TCCCAACTCT CTGGTCTAAC TCCCCACTCC AAGTCAGCTC TGCTACCTCA
  K
  ATCAACACTC CACGGAGCCC ACAGTTCTCA CCTGCACTGT AGCAGCTATT GTAGGCACGG
  TCAGGATCAG AAGGCATACT TCTGATACAT CGGAATAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166930	NES08482696	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T		T	T		T	G		T
ss132360148	ENSMUSSNP6105282	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				G
ss323731052	CHEV_11_69497324	CHEVERUD	SCREENING_POP	f	SNP										T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26908293					SNP	T	T	T	T	T	T	G	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166930	NES08482696	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1529 bp distal
Rr450067	regulatory region 450067	1987 bp distal
Rr450068	regulatory region 450068	1764 bp distal
Rr450069	regulatory region 450069	1248 bp distal
Rr450070	regulatory region 450070	859 bp distal
Rr450071	regulatory region 450071	11 bp proximal
Rr450072	regulatory region 450072	1427 bp proximal
Rr450073	regulatory region 450073	1722 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1738 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	501 bp upstream
Tssr102520	transcription start site region 102520	533 bp upstream
Tssr102521	transcription start site region 102521	574 bp upstream
Tssr102522	transcription start site region 102522	667 bp upstream
Tssr102523	transcription start site region 102523	729 bp upstream
Tssr108775	transcription start site region 108775	1966 bp upstream
Tssr108776	transcription start site region 108776	1926 bp upstream
Tssr108777	transcription start site region 108777	1869 bp upstream
Tssr108778	transcription start site region 108778	1841 bp upstream
Tssr108779	transcription start site region 108779	1817 bp upstream
Tssr108780	transcription start site region 108780	1743 bp upstream
Tssr108781	transcription start site region 108781	1453 bp downstream
Tssr108782	transcription start site region 108782	1515 bp downstream
Tssr108783	transcription start site region 108783	1698 bp downstream
Tssr108784	transcription start site region 108784	1715 bp downstream