rs26908294 SNP Detail

Summary

• ID
  rs26908294
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC CACTCCAAGT CAGCTCTGCT
  M
  CCTCATATCA ACACTCCACG GAGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37166931	NES08482695	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	A	C		A	C		A		A
ss132360144	ENSMUSSNP6805486	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C					C
ss323731051	CHEV_11_69497318	CHEVERUD	SCREENING_POP	f	SNP											A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs26908294					SNP	A	A	C	A	A	A	C	C	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166931	NES08482695	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1523 bp distal
Rr450067	regulatory region 450067	1981 bp distal
Rr450068	regulatory region 450068	1758 bp distal
Rr450069	regulatory region 450069	1242 bp distal
Rr450070	regulatory region 450070	853 bp distal
Rr450071	regulatory region 450071	17 bp proximal
Rr450072	regulatory region 450072	1433 bp proximal
Rr450073	regulatory region 450073	1728 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1732 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	507 bp upstream
Tssr102520	transcription start site region 102520	539 bp upstream
Tssr102521	transcription start site region 102521	580 bp upstream
Tssr102522	transcription start site region 102522	673 bp upstream
Tssr102523	transcription start site region 102523	735 bp upstream
Tssr108775	transcription start site region 108775	1960 bp upstream
Tssr108776	transcription start site region 108776	1920 bp upstream
Tssr108777	transcription start site region 108777	1863 bp upstream
Tssr108778	transcription start site region 108778	1835 bp upstream
Tssr108779	transcription start site region 108779	1811 bp upstream
Tssr108780	transcription start site region 108780	1737 bp upstream
Tssr108781	transcription start site region 108781	1459 bp downstream
Tssr108782	transcription start site region 108782	1521 bp downstream
Tssr108783	transcription start site region 108783	1704 bp downstream
Tssr108784	transcription start site region 108784	1721 bp downstream