rs26908295 SNP Detail

Summary

• ID
  rs26908295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGGGGAAC ATGTGCATGT GTGGAGATCA GAAGACAGCT
  TGAGAGTTGG TTCCTTCCTT TTGCTCTGTG GGTTCTCGGA ATCAAACCCA GGAGGTGAGA
  Y
  GTAAGGGATG GAGCAAGTTA CTTTCCTAAG TGAGCGGTCT CACTGGCTTT GTTGAATTTT
  GAAGGCAGTC TCACTCTGTA GCCTAGGCTG ACCTTGAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166932	NES08482728	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T	T		C	T	C		T
ss132360132	ENSMUSSNP664562	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss323731048	CHEV_11_69497035	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26908295					SNP	T	T	T	T	T	C	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166932	NES08482728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1240 bp distal
Rr450067	regulatory region 450067	1698 bp distal
Rr450068	regulatory region 450068	1475 bp distal
Rr450069	regulatory region 450069	959 bp distal
Rr450070	regulatory region 450070	570 bp distal
Rr450071	regulatory region 450071	300 bp proximal
Rr450072	regulatory region 450072	1716 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1449 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	790 bp upstream
Tssr102520	transcription start site region 102520	822 bp upstream
Tssr102521	transcription start site region 102521	863 bp upstream
Tssr102522	transcription start site region 102522	956 bp upstream
Tssr102523	transcription start site region 102523	1018 bp upstream
Tssr108774	transcription start site region 108774	1729 bp upstream
Tssr108775	transcription start site region 108775	1677 bp upstream
Tssr108776	transcription start site region 108776	1637 bp upstream
Tssr108777	transcription start site region 108777	1580 bp upstream
Tssr108778	transcription start site region 108778	1552 bp upstream
Tssr108779	transcription start site region 108779	1528 bp upstream
Tssr108780	transcription start site region 108780	1454 bp upstream
Tssr108781	transcription start site region 108781	1742 bp downstream
Tssr108782	transcription start site region 108782	1804 bp downstream
Tssr108783	transcription start site region 108783	1987 bp downstream