rs26908296 SNP Detail

Summary

• ID
  rs26908296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69573366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAGAGAA ACCCTGTCTC AAAAAACGAA AAAAGAAAAA
  AAAACAAAAA CTTTAAGCAG GGCGTGATTA AATAGTGAGA CACGACCGGT GTGCCAGGGC
  R
  TCCAGTACAT ACAAACTTCC CGGATACCAG TCTGATCGTG GAGAGCCTTT CGTTTATTTG
  TTTGTTAGTT TGTTTGAGAC AGGGTCTCAC CATTGTAACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37166933	NES08482747	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26908296					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166933	NES08482747	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69573366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	247 bp distal
Rr450067	regulatory region 450067	705 bp distal
Rr450068	regulatory region 450068	482 bp distal
Rr450069	regulatory region 450069	within coordinates
Rr450070	regulatory region 450070	402 bp proximal
Rr450071	regulatory region 450071	1293 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	456 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	306 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	37 bp downstream
Tssr102519	transcription start site region 102519	1783 bp upstream
Tssr102520	transcription start site region 102520	1815 bp upstream
Tssr102521	transcription start site region 102521	1856 bp upstream
Tssr102522	transcription start site region 102522	1949 bp upstream
Tssr108773	transcription start site region 108773	1875 bp upstream
Tssr108774	transcription start site region 108774	736 bp upstream
Tssr108775	transcription start site region 108775	684 bp upstream
Tssr108776	transcription start site region 108776	644 bp upstream
Tssr108777	transcription start site region 108777	587 bp upstream
Tssr108778	transcription start site region 108778	559 bp upstream
Tssr108779	transcription start site region 108779	535 bp upstream
Tssr108780	transcription start site region 108780	461 bp upstream