rs26908297 SNP Detail

Summary

• ID
  rs26908297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69573091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGCCTGAG CTTTGGGTGA TCTAGTGGGC TTCCCAGTGC
  ATGGCCAGAA TGTCAGGGGC CCCGCAAGGA TTGGACCAAA GCTAGGCGCT TAGGAAAACG
  R
  AGGCCGAACA TTGGGTTTTG AGGGCTTTGT TTTTAAAAAC AAACAAACAA ACAAAAAACA
  GCTGGGCGTG GTGGCGCACG CCTTTAGTCC CAGCACTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166934	NES08482769	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G		A	G	A		G
ss323731043	CHEV_11_69495767	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26908297					SNP	G	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166934	NES08482769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69573091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	within coordinates
Rr450067	regulatory region 450067	430 bp distal
Rr450068	regulatory region 450068	207 bp distal
Rr450069	regulatory region 450069	within coordinates
Rr450070	regulatory region 450070	677 bp proximal
Rr450071	regulatory region 450071	1568 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	181 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	581 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	312 bp downstream
Tssr108773	transcription start site region 108773	1600 bp upstream
Tssr108774	transcription start site region 108774	461 bp upstream
Tssr108775	transcription start site region 108775	409 bp upstream
Tssr108776	transcription start site region 108776	369 bp upstream
Tssr108777	transcription start site region 108777	312 bp upstream
Tssr108778	transcription start site region 108778	284 bp upstream
Tssr108779	transcription start site region 108779	260 bp upstream
Tssr108780	transcription start site region 108780	186 bp upstream