rs26908299 SNP Detail

Summary

• ID
  rs26908299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69572385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCCAGGC AGACCGGCCC CTCTCCAGTC TTCTCCCAGG
  AGACCTGATC GCTTCCCGGC CCCAGTATAG TTTGAAAGCT CGGGCGACTC GGCACACAAC
  R
  GTCTTAAGTC CTTTAAAGGG CTTCCTGGGC CCAGTTAGGT GCGAGCGAAG ACCAGAAATG
  GAAGAGGCCA CAAGGGCGGG GGGAGGGGAA GGGGCGTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166936	NES08482808	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G	G	A	G		G	A	G		A
ss132360116	ENSMUSSNP5472010	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss323731040	CHEV_11_69495061	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26908299					SNP	A	A	G	A	A	A	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166936	NES08482808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69572385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	within coordinates
Rr450067	regulatory region 450067	within coordinates
Rr450068	regulatory region 450068	277 bp proximal
Rr450069	regulatory region 450069	515 bp proximal
Rr450070	regulatory region 450070	1383 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	within coordinates
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	1287 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	473 bp upstream
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	1018 bp downstream
Tssr108773	transcription start site region 108773	894 bp upstream
Tssr108774	transcription start site region 108774	234 bp downstream
Tssr108775	transcription start site region 108775	263 bp downstream
Tssr108776	transcription start site region 108776	311 bp downstream
Tssr108777	transcription start site region 108777	344 bp downstream
Tssr108778	transcription start site region 108778	400 bp downstream
Tssr108779	transcription start site region 108779	435 bp downstream
Tssr108780	transcription start site region 108780	511 bp downstream