rs26908300 SNP Detail

Summary

• ID
  rs26908300
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69572253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGGGGGAG GGTGGTGCGA GGGCAATGGC TCAGGAAATG
  GAGTGATGAG AGGAAACGTT GAAGAAAACT GCAAGCGAAC CGAATCGGTG CTTAGCGACC
  K
  AATTAAGGAG ATGGGACAGA ACGGAGCCGT GGGGGCCAGG CAGACCGGCC CCTCTCCAGT
  CTTCTCCCAG GAGACCTGAT CGCTTCCCGG CCCCAGTAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166937	NES08482807	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	T	G	G		T	G	G		G
ss132360112	ENSMUSSNP3290855	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						T
ss323731039	CHEV_11_69494929	CHEVERUD	SCREENING_POP	f	SNP												G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26908300					SNP	G	G	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166937	NES08482807	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69572253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	within coordinates
Rr450067	regulatory region 450067	within coordinates
Rr450068	regulatory region 450068	409 bp proximal
Rr450069	regulatory region 450069	647 bp proximal
Rr450070	regulatory region 450070	1515 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	within coordinates
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	1419 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	605 bp upstream
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	1150 bp downstream
Tssr108773	transcription start site region 108773	762 bp upstream
Tssr108774	transcription start site region 108774	366 bp downstream
Tssr108775	transcription start site region 108775	395 bp downstream
Tssr108776	transcription start site region 108776	443 bp downstream
Tssr108777	transcription start site region 108777	476 bp downstream
Tssr108778	transcription start site region 108778	532 bp downstream
Tssr108779	transcription start site region 108779	567 bp downstream
Tssr108780	transcription start site region 108780	643 bp downstream