rs26908302 SNP Detail

Summary

• ID
  rs26908302
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69571754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTCTTTC ATCTTTCAGT ACCCTGTAAA ACAAAAGTTT
  GATTATCCAA CTGAGGACAC CCTACTCCTT TCTCCAAGAT CGGAACTGTT CTTCAGCATT
  K
  TCCCTCTAAT CTCAGATACA GCTAAAGACA AATCTAAAAA CTCATAACTT CAGCTCTTCC
  CAGCCAACCT CGTCCAGAAG GAACTGACTC TGCCATCAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166939	NES08482805	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	T		G	G		G	T		G
ss132360102	ENSMUSSNP4518623	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						T
ss323731037	CHEV_11_69494430	CHEVERUD	SCREENING_POP	f	SNP												G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26908302					SNP	G	G	G	G	G	G	G	T	T	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166939	NES08482805	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69571754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	339 bp proximal
Rr450067	regulatory region 450067	197 bp proximal
Rr450068	regulatory region 450068	908 bp proximal
Rr450069	regulatory region 450069	1146 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	within coordinates
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	1918 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	1104 bp upstream
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	1649 bp downstream
Tssr108773	transcription start site region 108773	263 bp upstream
Tssr108774	transcription start site region 108774	865 bp downstream
Tssr108775	transcription start site region 108775	894 bp downstream
Tssr108776	transcription start site region 108776	942 bp downstream
Tssr108777	transcription start site region 108777	975 bp downstream
Tssr108778	transcription start site region 108778	1031 bp downstream
Tssr108779	transcription start site region 108779	1066 bp downstream
Tssr108780	transcription start site region 108780	1142 bp downstream