rs26908331 SNP Detail

Summary

• ID
  rs26908331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69559828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG GTTCATCACA GAGCAACTCA
  R
  TTCTAAACTA AAGGAAAACT TGCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37166968	NES08482956	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A	G	A		G	A	A
ss132359933	ENSMUSSNP1029307	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss323730988	CHEV_11_69482504	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26908331					SNP	G	G	A	G	G	G	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166968	NES08482956	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69559828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3141	CpG island 3141	1914 bp proximal
Eif4a1	eukaryotic translation initiation factor 4A1	within coordinates
Gm22988	predicted gene, 22988	633 bp downstream
Gm24029	predicted gene, 24029	1026 bp upstream
Gm25835	predicted gene, 25835	7 bp upstream
Gm73992	predicted gene, 73992	123 bp downstream
Tssr108764	transcription start site region 108764	1747 bp upstream
Tssr108765	transcription start site region 108765	1616 bp upstream
Tssr108766	transcription start site region 108766	6 bp upstream