rs26908332 SNP Detail

Summary

• ID
  rs26908332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69558542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGAGGGG GGTAAAAAGG ATGATGGAAC ACTTGGGTTT
  CAGCATAGGG GTTGTTTAGT CTGTCAGACC TAGACTTACC TGTGGATGTA GTTTTCCCTG
  Y
  TGGTGGGAAG GTCATAGTTG ATGACTAAGG AGACCTGCTG CACATCAATG CCTCTGGCCT
  AGGTCAGGAA AGAATATAGC CATCAGAGGA TACAATCTAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37166969	NES08482955	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs26908332					SNP	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166969	NES08482955	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69558542 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	1563 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	within coordinates
Gm22988	predicted gene, 22988	1919 bp downstream
Gm24029	predicted gene, 24029	118 bp downstream
Gm25835	predicted gene, 25835	1136 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	1073 bp distal
Tssr102515	transcription start site region 102515	1874 bp downstream
Tssr102516	transcription start site region 102516	1223 bp downstream
Tssr102517	transcription start site region 102517	1201 bp downstream
Tssr108758	transcription start site region 108758	1891 bp upstream
Tssr108759	transcription start site region 108759	1873 bp upstream
Tssr108760	transcription start site region 108760	1811 bp upstream
Tssr108761	transcription start site region 108761	1640 bp upstream
Tssr108762	transcription start site region 108762	1567 bp upstream
Tssr108763	transcription start site region 108763	1547 bp upstream
Tssr108764	transcription start site region 108764	461 bp upstream
Tssr108765	transcription start site region 108765	330 bp upstream
Tssr108766	transcription start site region 108766	1275 bp downstream