rs26908334 SNP Detail

Summary

• ID
  rs26908334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69558010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAATAAAT ACTATACAAA
  ACAATGTAAA AATGGCTACC ATTTTCTCTC CCCTGCTCCC CTCACCAGGG GACAATTCCC
  TGGACAACCT CACTCAGGGG TTCTCCCTGT AGATTTGGTC CAGCAAATGA GGCCAGCCTT
  GTTTTTTAGC CCCTTGACTC ACTTTTGGAG ATTTGGCTGG GGTAGGAAAG CCTTTAGGAA
  Y
  GAGGTGACTA GGTTAGGGAA ATGCATTAGT GTTTGGGGGG GGAAGGAGAC GGCGCCTGGG
  GCAGAGCCTA CCCCAAAGAA AAGGGTGTCT AAAATGTTCA CGGTTCCTTC TTTTTGCCTC
  AAAAAGTGAC ATTTATTCAT AGAGAAAAAA AACTGAAACA AAAAAAAAAA AAGCCAAAAC
  AAAAACAAGA TGTCCATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37166971	NES08482953	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	T	C	C	T	C
ss132359921	ENSMUSSNP5284520	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26908334					SNP	C	C	T	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166971	NES08482953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69558010 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	1031 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	within coordinates
Gm24029	predicted gene, 24029	650 bp downstream
Gm25835	predicted gene, 25835	1668 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	541 bp distal
Tssr102512	transcription start site region 102512	1548 bp downstream
Tssr102513	transcription start site region 102513	1510 bp downstream
Tssr102514	transcription start site region 102514	1480 bp downstream
Tssr102515	transcription start site region 102515	1342 bp downstream
Tssr102516	transcription start site region 102516	691 bp downstream
Tssr102517	transcription start site region 102517	669 bp downstream
Tssr108754	transcription start site region 108754	1864 bp upstream
Tssr108755	transcription start site region 108755	1819 bp upstream
Tssr108756	transcription start site region 108756	1789 bp upstream
Tssr108757	transcription start site region 108757	1598 bp upstream
Tssr108758	transcription start site region 108758	1359 bp upstream
Tssr108759	transcription start site region 108759	1341 bp upstream
Tssr108760	transcription start site region 108760	1279 bp upstream
Tssr108761	transcription start site region 108761	1108 bp upstream
Tssr108762	transcription start site region 108762	1035 bp upstream
Tssr108763	transcription start site region 108763	1015 bp upstream
Tssr108764	transcription start site region 108764	41 bp downstream
Tssr108765	transcription start site region 108765	186 bp downstream
Tssr108766	transcription start site region 108766	1807 bp downstream