rs26908335 SNP Detail

Summary

• ID
  rs26908335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69557603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAATCCAC CTGCTTCTGC CTCCGGCAGA ATGCTGGGAT
  TAAAGGCTTG CGCCACCATA CCCAGCCAGT TTAAGTCTTA ATGCAGCAAG TTTCACTCAT
  R
  TCTTGTGCCT AACACTGAGG CAAATTACCA AATGTTAGTA ATGTGGGTCA TTTGGTATTG
  CAGGAAGCAA CATGGCAAAT TCAGTAATCA ACTAGTATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37166972	NES08482952	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	A	G	G		G	G	A
ss46467949	mCV25183281	ABI	CRAMUS_MOUSE	f	SNP		G	G				G		A
ss132359905	ENSMUSSNP6488947	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss323730982	CHEV_11_69480279	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26908335					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166972	NES08482952	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69557603 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	624 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	159 bp downstream
Gm24029	predicted gene, 24029	1057 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	134 bp distal
Tssr102512	transcription start site region 102512	1141 bp downstream
Tssr102513	transcription start site region 102513	1103 bp downstream
Tssr102514	transcription start site region 102514	1073 bp downstream
Tssr102515	transcription start site region 102515	935 bp downstream
Tssr102516	transcription start site region 102516	284 bp downstream
Tssr102517	transcription start site region 102517	262 bp downstream
Tssr108752	transcription start site region 108752	1847 bp upstream
Tssr108753	transcription start site region 108753	1657 bp upstream
Tssr108754	transcription start site region 108754	1457 bp upstream
Tssr108755	transcription start site region 108755	1412 bp upstream
Tssr108756	transcription start site region 108756	1382 bp upstream
Tssr108757	transcription start site region 108757	1191 bp upstream
Tssr108758	transcription start site region 108758	952 bp upstream
Tssr108759	transcription start site region 108759	934 bp upstream
Tssr108760	transcription start site region 108760	872 bp upstream
Tssr108761	transcription start site region 108761	701 bp upstream
Tssr108762	transcription start site region 108762	628 bp upstream
Tssr108763	transcription start site region 108763	608 bp upstream
Tssr108764	transcription start site region 108764	448 bp downstream
Tssr108765	transcription start site region 108765	593 bp downstream