rs26908338 SNP Detail

Summary

• ID
  rs26908338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69557033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCAATCC CCTTTGCCTT CTCTTGGAAG AGGAAATGAA
  AAGCCTCACT TCCCTTAACT AAAATAATCC CACCCCAAAC CTGACTCAGA CACCTCAGCT
  Y
  TAGCAACCCA CTCAAGCCAT TGGTTTTCAC AATTAGGCTG TGATTGGCAG TGACGTTCTC
  AGTGGGCGGT ACAAAGCCTT GGTTACCTCG TGAGAATGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37166975	NES08483013	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		C	C	T	T		C	T	T	C
ss46469751	mCV25183273	ABI	CRAMUS_MOUSE	f	SNP		T	T				T		C
ss132359893	ENSMUSSNP2388688	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss323730978	CHEV_11_69479709	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26908338					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166975	NES08483013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69557033 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	54 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	729 bp downstream
Gm24029	predicted gene, 24029	1627 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	within coordinates
Tssr102509	transcription start site region 102509	1988 bp downstream
Tssr102510	transcription start site region 102510	1854 bp downstream
Tssr102511	transcription start site region 102511	1819 bp downstream
Tssr102512	transcription start site region 102512	571 bp downstream
Tssr102513	transcription start site region 102513	533 bp downstream
Tssr102514	transcription start site region 102514	503 bp downstream
Tssr102515	transcription start site region 102515	365 bp downstream
Tssr102516	transcription start site region 102516	265 bp upstream
Tssr102517	transcription start site region 102517	295 bp upstream
Tssr108748	transcription start site region 108748	1825 bp upstream
Tssr108749	transcription start site region 108749	1748 bp upstream
Tssr108750	transcription start site region 108750	1719 bp upstream
Tssr108751	transcription start site region 108751	1690 bp upstream
Tssr108752	transcription start site region 108752	1277 bp upstream
Tssr108753	transcription start site region 108753	1087 bp upstream
Tssr108754	transcription start site region 108754	887 bp upstream
Tssr108755	transcription start site region 108755	842 bp upstream
Tssr108756	transcription start site region 108756	812 bp upstream
Tssr108757	transcription start site region 108757	621 bp upstream
Tssr108758	transcription start site region 108758	382 bp upstream
Tssr108759	transcription start site region 108759	364 bp upstream
Tssr108760	transcription start site region 108760	302 bp upstream
Tssr108761	transcription start site region 108761	131 bp upstream
Tssr108762	transcription start site region 108762	58 bp upstream
Tssr108763	transcription start site region 108763	38 bp upstream
Tssr108764	transcription start site region 108764	1018 bp downstream
Tssr108765	transcription start site region 108765	1163 bp downstream