rs26910355 SNP Detail

Summary

• ID
  rs26910355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:8453254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGTGTG TTGGACCTTC
  CATAAAGAAA GCTTGTCCCT CACCCTGCCT CCTACAAGAG CGGCTGTACT GCCTGGAACC
  TAAGACGCCT GACTTCTCCT GGGCGAGGCA CCAGAATATG GCAATAAAGG AAGGTCTGTG
  ACAGCAGGTC CCAAACAGGG CCAGGTGCCC CCGGCATACA AAGACACCCC AAACCCTCAA
  R
  TGCTGGCCAC AGGGTCGCAG TGCCCATCCT GGCCCCCTAG CATACAAACA CACCCCAAGC
  CCTCAAATGC TGGCCACAGG GCTGCAGTGC CCATCCTGGC GCCTTCTAAC CCAGCTCCCT
  GAAGACATTT TAAACAGAAA ACAGATTCAG GCCAAGAAAA ATAGAAAATA GGATCCTCAG
  GACAGTCCAC CTGAGCAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37103181	NES08394196	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs26910355					SNP	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37103181	NES08394196	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:8453254 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr442532	regulatory region 442532			1851 bp distal
Rr442533	regulatory region 442533			within coordinates
Tns3	tensin 3			Intron
				Noncoding-Transcript-Variant
Tssr106802	transcription start site region 106802			529 bp downstream
Tssr106803	transcription start site region 106803			542 bp downstream
Tssr106804	transcription start site region 106804			632 bp downstream
Tssr106805	transcription start site region 106805			1781 bp downstream