rs26913537 SNP Detail

Summary

• ID
  rs26913537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:4144574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGGTCA TGTTTGACAG
  CATGTTGGTG ATACTTCCTG GGTATTTATT TATTTTTGAG ACAGTGTCTC GCTGTGTTTC
  CAGTGCTGAC CTGGAACCCC TATGTAGACC AGAATGGCTT TGAGCTCAGG GAGTTCTGCC
  TGACTCTGTC TCCTGAGTGC TGGGATCAAA GGCCTGTATC ACTACACTGG CCCATATCAT
  Y
  TTAGTCTTTG GTAGCAGTTA CAGAAGTAAT GGGAAAAAGT TATTTGGCTT TGTGTACAGA
  CAGGAAAACT GACTGAGCAA TGGATGAAAC TAGGCCTGCT ATCTGGGGTC CCAATTTTCC
  ACCCTACTAA AGCTGATAGC TTGTGGTCTC TCTTCCCTCT TCCTGTCAGC CCAGCCTCAA
  ATGCTTACTT GTCCTAATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37111063	NES08403668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26913537					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37111063	NES08403668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4144574 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Dcr2	DNA Segment, Chr 11, Derry C. Roopenian 2			244 bp proximal
Rr402391	regulatory region 402391			1123 bp upstream
Rr441759	regulatory region 441759			888 bp proximal
Rr441760	regulatory region 441760			1940 bp proximal
Tbc1d10a	TBC1 domain family, member 10a			Intron
				Noncoding-Transcript-Variant