rs26913538 SNP Detail

Summary

• ID
  rs26913538
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:4144357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATAAAA TAACCTGTTG
  TCAGTACAGT GTTATTTATA TGTCTGTTTT CCAGGCTCAC CGTTTGGTAT TGGATAACTA
  AGAGGTGAGC TCTTGCCTGG GAAAGACTAT TGCACTCTTC AGCATTTCTT AGTTGTCTGT
  GGTTCTTTGT ATAGGGATGG GTCCCTGTGT GCTTTCCTTC TTCCTCATTA GCATGTCTCG
  S
  TGTCAGCGCC GTCCTTGTTC AGGTCATGTT TGACAGCATG TTGGTGATAC TTCCTGGGTA
  TTTATTTATT TTTGAGACAG TGTCTCGCTG TGTTTCCAGT GCTGACCTGG AACCCCTATG
  TAGACCAGAA TGGCTTTGAG CTCAGGGAGT TCTGCCTGAC TCTGTCTCCT GAGTGCTGGG
  ATCAAAGGCC TGTATCACTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37111064	NES08403667	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26913538					SNP	C	C	C	C	C	G	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37111064	NES08403667	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4144357 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Dcr2	DNA Segment, Chr 11, Derry C. Roopenian 2			461 bp proximal
Rr402391	regulatory region 402391			1340 bp upstream
Rr441759	regulatory region 441759			1105 bp proximal
Tbc1d10a	TBC1 domain family, member 10a			Intron
				Noncoding-Transcript-Variant