rs26914603 SNP Detail

Summary

• ID
  rs26914603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5828031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACACAGC TTTCTTTTTC
  ATTTTACTTT TTTTTTTTTT TTTTTGGTAC AGCTATTACA AAGTTCAAAT TCCCCTAGCT
  GGTTCGGCTT TCTTTAATGC GCAGCTCTGG CTTAGGGAGC GGACCCTATG AATTTGCCAA
  ATGGGCACAT GTAAACTGGA TGTAAGCCAA AAACGCACGG TGGTGGCAGC GGCCCACACG
  R
  TGCTCCAGGC CGGACCCGAC GGGAGACCTG CCCCGAAGCA GACACGCCCA GCTCGGGCCC
  ATGTTACAGT TCGAAGCACC CTCAAGACCC CGGCCCGCTG TCCAGGTACC GCCAAGTCTG
  ACCCAGGACC CACGTTAACC CCGCTCAGCA GCACACTCAC CGCGCCACGC CGCATCCCGC
  CAATCTCTGC GCGCCCGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37108238	NES08405024	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	G		G	G	A	A	A	A	A
ss131640158	ENSMUSSNP3146440	ENSEMBL	ENSEMBL_Sanger	f	SNP							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26914603					SNP	A	A	A	G	G	G	G	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37108238	NES08405024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5828031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2545	CpG island 2545	within coordinates
Gm53664	predicted gene, 53664	within coordinates
Pold2	polymerase (DNA directed), delta 2, regulatory subunit	within coordinates
Rr402404	regulatory region 402404	126 bp upstream
Rr442177	regulatory region 442177	within coordinates
Rr442178	regulatory region 442178	251 bp proximal
Rr442179	regulatory region 442179	1767 bp proximal
Tssr100216	transcription start site region 100216	337 bp upstream
Tssr106653	transcription start site region 106653	1122 bp upstream
Tssr106654	transcription start site region 106654	176 bp downstream
Tssr106655	transcription start site region 106655	220 bp downstream