rs26914604 SNP Detail

Summary

• ID
  rs26914604
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5828030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAACACAG CTTTCTTTTT
  CATTTTACTT TTTTTTTTTT TTTTTTGGTA CAGCTATTAC AAAGTTCAAA TTCCCCTAGC
  TGGTTCGGCT TTCTTTAATG CGCAGCTCTG GCTTAGGGAG CGGACCCTAT GAATTTGCCA
  AATGGGCACA TGTAAACTGG ATGTAAGCCA AAAACGCACG GTGGTGGCAG CGGCCCACAC
  K
  GTGCTCCAGG CCGGACCCGA CGGGAGACCT GCCCCGAAGC AGACACGCCC AGCTCGGGCC
  CATGTTACAG TTCGAAGCAC CCTCAAGACC CCGGCCCGCT GTCCAGGTAC CGCCAAGTCT
  GACCCAGGAC CCACGTTAAC CCCGCTCAGC AGCACACTCA CCGCGCCACG CCGCATCCCG
  CCAATCTCTG CGCGCCCGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ
ss37108239	NES08405023	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ
rs26914604					SNP	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37108239	NES08405023	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5828030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2545	CpG island 2545	within coordinates
Gm53664	predicted gene, 53664	within coordinates
Pold2	polymerase (DNA directed), delta 2, regulatory subunit	within coordinates
Rr402404	regulatory region 402404	127 bp upstream
Rr442177	regulatory region 442177	within coordinates
Rr442178	regulatory region 442178	252 bp proximal
Rr442179	regulatory region 442179	1768 bp proximal
Tssr100216	transcription start site region 100216	338 bp upstream
Tssr106653	transcription start site region 106653	1121 bp upstream
Tssr106654	transcription start site region 106654	177 bp downstream
Tssr106655	transcription start site region 106655	221 bp downstream