rs26914605 SNP Detail

Summary

• ID
  rs26914605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5826923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGCCCGG CTCACCAGGA
  ACGGTCTCAT CTGGATGAGG CGGGTGGCAT AAATATGGGC GTACTGCCGG TTAAAGCTGC
  GCTCTCCCAG TCGGAAGGGC TGTGAGGAGT TGGTGTAAGT TGCCACAGGT ACCCGGGCAA
  AGGTGGCATT GCTGGCAGAG GGCGGGGCGA GCAGAGTGTG GGCCCTCTGT GCTGCCTGCT
  Y
  GGAGAACATG GCGGCACTCC TGGCTTGTTT GGTCCAAGCA GCTGTGTCCA GGCCGAGGAG
  TTATCACTGC AGAGACACAC AAAGGCATTC CTGCAATCCC TTCTTGTACC CAAAGCTCCC
  CTAGTGTCCC AACCACGCTG TCCACAATGT GCACACATGT GTCCGGAGGT GTCATCCTAT
  AACCTAGTCA GATACAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37108240	NES08405037	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26914605					SNP	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37108240	NES08405037	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5826923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2545	CpG island 2545	973 bp proximal
Gm53664	predicted gene, 53664	within coordinates
Pold2	polymerase (DNA directed), delta 2, regulatory subunit	within coordinates
Rr402404	regulatory region 402404	1234 bp upstream
Rr442177	regulatory region 442177	492 bp proximal
Rr442178	regulatory region 442178	1359 bp proximal
Tssr100216	transcription start site region 100216	1445 bp upstream
Tssr106653	transcription start site region 106653	14 bp upstream
Tssr106654	transcription start site region 106654	1284 bp downstream
Tssr106655	transcription start site region 106655	1328 bp downstream