rs26914606 SNP Detail

Summary

• ID
  rs26914606
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5826398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT CCCTCAAAGA CCAAGGTGCC
  M
  AGCCTGCTGC TATGAGGAGC TCTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37108241	NES08405036	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	C	C	A		C	A		A	A	A	A
ss38793317	mCV23258076	ABI	CRAMUS_MOUSE	f	SNP		C	A					A
ss131640152	ENSMUSSNP7011678	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A					A
ss323549254	CHEV_11_5776401	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26914606					SNP	A	C	A	A	C	C	A	A	C	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37108241	NES08405036	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5826398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2545	CpG island 2545	1498 bp proximal
Gm53664	predicted gene, 53664	within coordinates
Pold2	polymerase (DNA directed), delta 2, regulatory subunit	within coordinates
Rr402404	regulatory region 402404	1759 bp upstream
Rr442177	regulatory region 442177	1017 bp proximal
Rr442178	regulatory region 442178	1884 bp proximal
Tssr100216	transcription start site region 100216	1970 bp upstream
Tssr106653	transcription start site region 106653	482 bp downstream
Tssr106654	transcription start site region 106654	1809 bp downstream
Tssr106655	transcription start site region 106655	1853 bp downstream