rs26914656 SNP Detail

Summary

• ID
  rs26914656
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5787474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCG CCCTGGGCCA CAGTAAGTCC
  M
  TACCCTGGGG TGACGGGCAC AATTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37108295	NES08405480	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	A	A		A		A	A		C	C	C	C
ss38691262	mCV25062381	ABI	CRAMUS_MOUSE	f	SNP		A	C				C		C
ss131639962	ENSMUSSNP3817182	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
ss323549167	CHEV_11_5737477	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26914656					SNP	C	A	C	C	A	A	C	A	C	A	A	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37108295	NES08405480	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5787474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	within coordinates
Polm	polymerase (DNA directed), mu	within coordinates
Rr369123	regulatory region 369123	169 bp upstream
Rr442169	regulatory region 442169	1264 bp distal
Rr442170	regulatory region 442170	305 bp proximal
Rr442171	regulatory region 442171	555 bp proximal
Tssr106647	transcription start site region 106647	253 bp downstream
Tssr106648	transcription start site region 106648	271 bp downstream
Tssr106649	transcription start site region 106649	286 bp downstream