rs26914657 SNP Detail

Summary

• ID
  rs26914657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5787397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGAGCTA GTTGGTGACG
  TCTGCAAACT CAGGACATCT TTGACCGCTG GCTCATTGGA GGGAATGCAG CTAGCAAATA
  TTTCTCACTA ACCATTCTTT CTTTTATAGC TCTTTAAGAA GCCTCTGACT CGATGGCATC
  CTTTCAAAAA GAGGAACTCC GGGTTGGAGA CCGTACCGCA ACCGCGAAGT ACCGAGGCTG
  R
  CTTGGAACCC AAAGCCGCAG GTGCTGCTTG CTGTCACAGC TGCGCGCCAG CTCCCGCCCT
  GGGCCACAGT AAGTCCCTAC CCTGGGGTGA CGGGCACAAT TACACCAGCT CCCGGAGGGG
  GATGGCATCC CACCACCATC GGGGCCTCCC GGGAGCCGCA CACCTGTAAG CATCTAGGAC
  GCGGAAGCCT TTGGACCGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37108296	NES08405479	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26914657					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37108296	NES08405479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5787397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	within coordinates
Polm	polymerase (DNA directed), mu	within coordinates
Rr369123	regulatory region 369123	246 bp upstream
Tssr106647	transcription start site region 106647	330 bp downstream
Tssr106648	transcription start site region 106648	348 bp downstream
Tssr106649	transcription start site region 106649	363 bp downstream