rs26914658 SNP Detail

Summary

• ID
  rs26914658
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5787317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT CTTTTATAGC TCTTTAAGAA
  K
  CCTCTGACTC GATGGCATCC TTTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37108297	NES08405478	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	T		G			G	G	G	G		G
ss38796612	mCV25062380	ABI	CRAMUS_MOUSE	f	SNP		T	G			G		G
ss131639959	ENSMUSSNP5227556	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					G
ss323549166	CHEV_11_5737320	CHEVERUD	SCREENING_POP	f	SNP									T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26914658					SNP	G	T	G	G	T	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37108297	NES08405478	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5787317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	within coordinates
Polm	polymerase (DNA directed), mu	within coordinates
Rr369123	regulatory region 369123	326 bp upstream
Tssr106647	transcription start site region 106647	410 bp downstream
Tssr106648	transcription start site region 106648	428 bp downstream
Tssr106649	transcription start site region 106649	443 bp downstream