rs26914660 SNP Detail

Summary

• ID
  rs26914660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5787204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT GGGCATTTTC TCTACTGGAG
  Y
  TAGTTGGTGA CGTCTGCAAA CTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37108299	NES08405475	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	T	C		C		T	T		C	C	C	C		C
ss38828558	mCV25062376	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss131639956	ENSMUSSNP1998246	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss323549165	CHEV_11_5737207	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26914660					SNP	C	T	C	C	T	T	C	C	C	C	T	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37108299	NES08405475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5787204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	110 bp proximal
Polm	polymerase (DNA directed), mu	within coordinates
Rr369123	regulatory region 369123	439 bp upstream
Tssr106647	transcription start site region 106647	523 bp downstream
Tssr106648	transcription start site region 106648	541 bp downstream
Tssr106649	transcription start site region 106649	556 bp downstream