rs26914661 SNP Detail

Summary

• ID
  rs26914661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5786698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTCCAT TGGTCCAACA
  GGTTCTTAGC TGCAGCCTCA CCCACAAGCC ACTTGGGCAT GTTACCCGCC ACCCTCTGCC
  TCAGGTGCCT TAGTGGCCAG GGCCAGGTGT TTCTGATCTC AATGCTAATT GCTGTTTAGA
  GACTTGCTTT GTAGGCCAGG CTAGCCTGGA ACTCTAGTAC CCTTGTACCA GGACTACAGG
  Y
  TGGCATACCA TTCTGCTAAG ATTTTAAGAC ACAAGAATTT TGCCCTATTT ATTCAAACCC
  CAGTAGGCAG ACTCTTGTTG TATGTACTTG GAAAGCATCG TATTTATATT TCCTTTACAC
  TGGGAAAATC CAATGCAGGC CACCTTGTCA GGCTGTGGTA AGAATGTAGA GCCACACGAA
  ATCCAAATTG TTATCTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37108300	NES08405504	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26914661					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37108300	NES08405504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5786698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	616 bp proximal
Polm	polymerase (DNA directed), mu	within coordinates
Rr369123	regulatory region 369123	945 bp upstream
Tssr106647	transcription start site region 106647	1029 bp downstream
Tssr106648	transcription start site region 106648	1047 bp downstream
Tssr106649	transcription start site region 106649	1062 bp downstream