rs26917409 SNP Detail

Summary

• ID
  rs26917409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75469382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTTGGA AGAGCAGTCA
  GTGCTCTTAA CTGCTGAGCC ATCTCTCCAA GCCCATGTCT TGCATTTTTA ATTTCATCTA
  TTTATTTCTT TCCCAGCCTG GTTCATAAGA AATGTTATTC AGAGACAGCA AATGGGTTAA
  CCACTTGAAT CTAATTCCTG AGGTGCACAA AGTCTGATTT AGTGACAGAC TTGTCATAGA
  Y
  ACTCAGCAGC TTGCCCTCAG GTCTGCCGAC TCCCATGCCC AGTTGGATCA TTTGAGCAGC
  CAGAATCATG AGTAATGGGC CATTTGTTTC TTTTTGTAGT ACTGGGGACA GAACTCAGGG
  CCTCAGGCAC GCTAAGAGCC TCACCGCTGA GTTCCACCTG CAGCCTGGCT GCTCTTTGTC
  CAGTGTCTGT CTGGACCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157041	NES08477012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917409					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157041	NES08477012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75469382 () rs orientation: forward

Symbol	Name	Function Class
Slc43a2	solute carrier family 43, member 2	981 bp downstream
Tssr102985	transcription start site region 102985	1770 bp downstream
Tssr102986	transcription start site region 102986	1647 bp downstream
Tssr102987	transcription start site region 102987	1606 bp downstream
Tssr102988	transcription start site region 102988	1511 bp downstream
Tssr102989	transcription start site region 102989	1432 bp downstream
Tssr102990	transcription start site region 102990	1418 bp downstream