rs26917411 SNP Detail

Summary

• ID
  rs26917411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75468719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGAGGG GACAGTCAGA
  GGATGCAGAG CAGAGATGCT AGGAGACAAG GCCTGCAAGC TTGGAAGGTG TCTGCCCCCC
  ATCTTTTGTT GTCACCATTC CCCACCCCCA CCCCACTTTG GATGGAGTCA ACCTCTTTTT
  TTTGGATGGA GCAGACATCT TTTTCTCTGG TATGACCTCC ACCTCAAGGG CAAACCAAGA
  Y
  TTGGGGACTG CAGCCCCCAC TTAGAGAGAC AGCCAATTAC TGTCAGCTGG AATGTGCCCC
  ATGGGGCCAG ATCTGATATA TTGTTTTCCT CCTGAGAAGT TAGGAATCCT GAGTTTTCTG
  TAAAATATCA CTCTTTTCAT ATGTTAGCTC ACCAGCCGCT TTTTGTGTTT TAACCCTGTA
  TAGGCCAGTG TGAGAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157043	NES08477025	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917411					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157043	NES08477025	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75468719 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	1766 bp downstream
Rr451213	regulatory region 451213	1823 bp distal
Slc43a2	solute carrier family 43, member 2	318 bp downstream
Tssr102985	transcription start site region 102985	1107 bp downstream
Tssr102986	transcription start site region 102986	984 bp downstream
Tssr102987	transcription start site region 102987	943 bp downstream
Tssr102988	transcription start site region 102988	848 bp downstream
Tssr102989	transcription start site region 102989	769 bp downstream
Tssr102990	transcription start site region 102990	755 bp downstream