rs26917412 SNP Detail

Summary

• ID
  rs26917412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75468547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCCTTGG CACACAGTAA
  GCACTTAATA AATGTATGCT GAGAATGATG AAGAACTCCT CTGTGGCTTC CATGTCTCTT
  TCTGCCTGGA TCACACCACT CTTCCTCAGA CTCCCTGCCC CTAGTGAGCA GCATGGTTCT
  CACCGCTGCT CCAGTGGAGG GGGCCTGAAG CTCAGGAGAG GGGACAGTCA GAGGATGCAG
  R
  GCAGAGATGC TAGGAGACAA GGCCTGCAAG CTTGGAAGGT GTCTGCCCCC CATCTTTTGT
  TGTCACCATT CCCCACCCCC ACCCCACTTT GGATGGAGTC AACCTCTTTT TTTTGGATGG
  AGCAGACATC TTTTTCTCTG GTATGACCTC CACCTCAAGG GCAAACCAAG ACTTGGGGAC
  TGCAGCCCCC ACTTAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157044	NES08477024	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917412					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157044	NES08477024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75468547 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	1594 bp downstream
Rr451213	regulatory region 451213	1651 bp distal
Slc43a2	solute carrier family 43, member 2	146 bp downstream
Tssr102985	transcription start site region 102985	935 bp downstream
Tssr102986	transcription start site region 102986	812 bp downstream
Tssr102987	transcription start site region 102987	771 bp downstream
Tssr102988	transcription start site region 102988	676 bp downstream
Tssr102989	transcription start site region 102989	597 bp downstream
Tssr102990	transcription start site region 102990	583 bp downstream