rs26917414 SNP Detail

Summary

• ID
  rs26917414
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75467798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGCTTC TGTGCTCTCA
  CGAGGTGGCT AAGGGGACCT GTAGGTAAAT CGCAAGAACA GCAGTGTGTG TAGCTCACAG
  CAGAAACTTA ACACCAGGAC CCTGGAGAAA GGCAGACAGC ACGGGAGCCA GGCACCCCCC
  CCCCCTCCTA TGACAGGACC CTGACACAAG GGGACTGACC ATGTCAGACT GGTGGCCAGA
  K
  AAAGATGGTA CTGACCTCAG TCTCTTCAGA AGTCGTCTTA CAGAGAAGCC TTAAGTTCCC
  CCCTTGCCTA CTTTTCTATT TTGTCCTTCA CGTTTTTGGT AAGAGGCTTG GCCAAAGAGT
  CTTGATGTCA AAAGTCCCAG CAGCCCGTAC CGCCTTTTTG AATGACTACT TGGCCAGGCT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157046	NES08477034	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917414					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157046	NES08477034	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75467798 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	845 bp downstream
Rr451213	regulatory region 451213	902 bp distal
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	186 bp downstream
Tssr102986	transcription start site region 102986	63 bp downstream
Tssr102987	transcription start site region 102987	22 bp downstream
Tssr102988	transcription start site region 102988	44 bp upstream
Tssr102989	transcription start site region 102989	118 bp upstream
Tssr102990	transcription start site region 102990	155 bp upstream