rs26917416 SNP Detail

Summary

• ID
  rs26917416
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75467218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTACTAGGC ACAACCTAAA ATTGAGTAAT ATACATATAT
  ATATATATAT ATATATATAT ATATATAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  W
  GTATTGACTC AGCTGTGTGG AAAGAGCACC CAAGGGTTAC AGGAGGGCTG GCTTCTCCTC
  GGGCTGTAGC TCTTCCCTGG ATTGAGGGTC AAGATGAGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37157048	NES08477032	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T		A	A		A
ss323751075	CHEV_11_75389894	CHEVERUD	SCREENING_POP	f	SNP								A			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs26917416					SNP	A	A	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157048	NES08477032	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75467218 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	265 bp downstream
Rr451213	regulatory region 451213	322 bp distal
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	380 bp upstream
Tssr102986	transcription start site region 102986	498 bp upstream
Tssr102987	transcription start site region 102987	545 bp upstream
Tssr102988	transcription start site region 102988	624 bp upstream
Tssr102989	transcription start site region 102989	698 bp upstream
Tssr102990	transcription start site region 102990	735 bp upstream