rs26917417 SNP Detail

Summary

• ID
  rs26917417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75467119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTCTGAT CAAAACTTGT
  ACATAGCCAG CCAGTGGTGC TGGTGCACAC CTTTAACCCC AGCTCTCCCC TGCTCAAAGC
  TCAGCGCTTG TCTCCACAGA GCCCAGCCAC AGGGGCTGTT ATAGCCTCAA CACTGTTCCC
  TAGGAAGGGC AGTAAGGTAG TTGTGGGTTT TATGGCAGTG ACAGTGCCTT ATCTGTGAAG
  Y
  TACTAGGCAC AACCTAAAAT TGAGTAATAT ACATATATAT ATATATATAT ATATATATAT
  ATATAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGTG TATTGACTCA GCTGTGTGGA
  AAGAGCACCC AAGGGTTACA GGAGGGCTGG CTTCTCCTCG GGCTGTAGCT CTTCCCTGGA
  TTGAGGGTCA AGATGAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157049	NES08477051	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917417					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157049	NES08477051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75467119 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	166 bp downstream
Rr451213	regulatory region 451213	223 bp distal
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	479 bp upstream
Tssr102986	transcription start site region 102986	597 bp upstream
Tssr102987	transcription start site region 102987	644 bp upstream
Tssr102988	transcription start site region 102988	723 bp upstream
Tssr102989	transcription start site region 102989	797 bp upstream
Tssr102990	transcription start site region 102990	834 bp upstream