rs26917418 SNP Detail

Summary

• ID
  rs26917418
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75467072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCGGGA CCACCTCCTG
  TGCTCTGTCC CCTACACCCA CATCCAGAAG TTCTGATCAA AACTTGTACA TAGCCAGCCA
  GTGGTGCTGG TGCACACCTT TAACCCCAGC TCTCCCCTGC TCAAAGCTCA GCGCTTGTCT
  CCACAGAGCC CAGCCACAGG GGCTGTTATA GCCTCAACAC TGTTCCCTAG GAAGGGCAGT
  M
  AGGTAGTTGT GGGTTTTATG GCAGTGACAG TGCCTTATCT GTGAAGCTAC TAGGCACAAC
  CTAAAATTGA GTAATATACA TATATATATA TATATATATA TATATATATA TAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGTGTAT TGACTCAGCT GTGTGGAAAG AGCACCCAAG
  GGTTACAGGA GGGCTGGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157050	NES08477050	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917418					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157050	NES08477050	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75467072 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	119 bp downstream
Rr451213	regulatory region 451213	176 bp distal
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	526 bp upstream
Tssr102986	transcription start site region 102986	644 bp upstream
Tssr102987	transcription start site region 102987	691 bp upstream
Tssr102988	transcription start site region 102988	770 bp upstream
Tssr102989	transcription start site region 102989	844 bp upstream
Tssr102990	transcription start site region 102990	881 bp upstream