rs26917419 SNP Detail

Summary

• ID
  rs26917419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75466878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGGCAC CGATGGAAGG
  AACAGGAAGC GATGCCAGCC TTGTGGTTTT ACCCGTCAAG GACAGTCTCA CCAGAAGCCC
  CTCCTTTGTG GTCTTGGCGT TCATCAAGGA TGGATTCCCC TGGGACTCTA CCCTTACGAC
  TCTGCCGGGA CCTATTCACA GCTGGCTCCA ACCTTCATTA AAGCCAAGGT ACAGGCCCTC
  R
  GGACCACCTC CTGTGCTCTG TCCCCTACAC CCACATCCAG AAGTTCTGAT CAAAACTTGT
  ACATAGCCAG CCAGTGGTGC TGGTGCACAC CTTTAACCCC AGCTCTCCCC TGCTCAAAGC
  TCAGCGCTTG TCTCCACAGA GCCCAGCCAC AGGGGCTGTT ATAGCCTCAA CACTGTTCCC
  TAGGAAGGGC AGTAAGGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157051	NES08477049	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917419					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157051	NES08477049	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75466878 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	within coordinates
Rr451213	regulatory region 451213	within coordinates
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	720 bp upstream
Tssr102986	transcription start site region 102986	838 bp upstream
Tssr102987	transcription start site region 102987	885 bp upstream
Tssr102988	transcription start site region 102988	964 bp upstream
Tssr102989	transcription start site region 102989	1038 bp upstream
Tssr102990	transcription start site region 102990	1075 bp upstream