rs26917420 SNP Detail

Summary

• ID
  rs26917420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75466678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGCCCA AAGGGTGCAA
  GCTCAGAATG GTTTCCATAT CTTGGAGCCA ATGCTTTCTC AGGTTTGAGG CAAGCTATTT
  GCACAAGAGT CACGTGAGCT CTGGAGGCTG ATGGGTCCTT GCAGGAATAA TTTCCCTGAT
  CTCTTCAACC TCAAGAAGAG TTACCCCAAG ATAGGCACAG AAGCACAGGC TAGACACAGG
  Y
  TAGAGGCACC GATGGAAGGA ACAGGAAGCG ATGCCAGCCT TGTGGTTTTA CCCGTCAAGG
  ACAGTCTCAC CAGAAGCCCC TCCTTTGTGG TCTTGGCGTT CATCAAGGAT GGATTCCCCT
  GGGACTCTAC CCTTACGACT CTGCCGGGAC CTATTCACAG CTGGCTCCAA CCTTCATTAA
  AGCCAAGGTA CAGGCCCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157052	NES08477048	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917420					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157052	NES08477048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75466678 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	within coordinates
Rr451213	regulatory region 451213	within coordinates
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	920 bp upstream
Tssr102986	transcription start site region 102986	1038 bp upstream
Tssr102987	transcription start site region 102987	1085 bp upstream
Tssr102988	transcription start site region 102988	1164 bp upstream
Tssr102989	transcription start site region 102989	1238 bp upstream
Tssr102990	transcription start site region 102990	1275 bp upstream