rs26917421 SNP Detail

Summary

• ID
  rs26917421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75466642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAGGCAAG CTATTTGCAC AAGAGTCACG TGAGCTCTGG
  AGGCTGATGG GTCCTTGCAG GAATAATTTC CCTGATCTCT TCAACCTCAA GAAGAGTTAC
  Y
  CCAAGATAGG CACAGAAGCA CAGGCTAGAC ACAGGCTAGA GGCACCGATG GAAGGAACAG
  GAAGCGATGC CAGCCTTGTG GTTTTACCCG TCAAGGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37157053	NES08477047	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	C	T		C	T	C	C		C
ss38857329	mCV22728854	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		T
ss132438685	ENSMUSSNP5191950	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss323751074	CHEV_11_75389318	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26917421					SNP	T	T	C	T	T	T	T	C	C	T	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157053	NES08477047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75466642 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	11 bp upstream
Rr451211	regulatory region 451211	1992 bp distal
Rr451213	regulatory region 451213	within coordinates
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	956 bp upstream
Tssr102986	transcription start site region 102986	1074 bp upstream
Tssr102987	transcription start site region 102987	1121 bp upstream
Tssr102988	transcription start site region 102988	1200 bp upstream
Tssr102989	transcription start site region 102989	1274 bp upstream
Tssr102990	transcription start site region 102990	1311 bp upstream