rs26917422 SNP Detail

Summary

• ID
  rs26917422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75466640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCAGC TAGAACCCCC
  CCCCCCCCCA TTGGAAGCAA AGAGCCCAAA GGGTGCAAGC TCAGAATGGT TTCCATATCT
  TGGAGCCAAT GCTTTCTCAG GTTTGAGGCA AGCTATTTGC ACAAGAGTCA CGTGAGCTCT
  GGAGGCTGAT GGGTCCTTGC AGGAATAATT TCCCTGATCT CTTCAACCTC AAGAAGAGTT
  R
  CCCCAAGATA GGCACAGAAG CACAGGCTAG ACACAGGCTA GAGGCACCGA TGGAAGGAAC
  AGGAAGCGAT GCCAGCCTTG TGGTTTTACC CGTCAAGGAC AGTCTCACCA GAAGCCCCTC
  CTTTGTGGTC TTGGCGTTCA TCAAGGATGG ATTCCCCTGG GACTCTACCC TTACGACTCT
  GCCGGGACCT ATTCACAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157054	NES08477046	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917422					SNP	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157054	NES08477046	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75466640 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	13 bp upstream
Rr451211	regulatory region 451211	1990 bp distal
Rr451213	regulatory region 451213	within coordinates
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	958 bp upstream
Tssr102986	transcription start site region 102986	1076 bp upstream
Tssr102987	transcription start site region 102987	1123 bp upstream
Tssr102988	transcription start site region 102988	1202 bp upstream
Tssr102989	transcription start site region 102989	1276 bp upstream
Tssr102990	transcription start site region 102990	1313 bp upstream