rs26917423 SNP Detail

Summary

• ID
  rs26917423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75466619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCACTAA CACAGCCGAG
  GCTGTCTCAG CTAGAACCCC CCCCCCCCCC ATTGGAAGCA AAGAGCCCAA AGGGTGCAAG
  CTCAGAATGG TTTCCATATC TTGGAGCCAA TGCTTTCTCA GGTTTGAGGC AAGCTATTTG
  CACAAGAGTC ACGTGAGCTC TGGAGGCTGA TGGGTCCTTG CAGGAATAAT TTCCCTGATC
  Y
  CTTCAACCTC AAGAAGAGTT ACCCCAAGAT AGGCACAGAA GCACAGGCTA GACACAGGCT
  AGAGGCACCG ATGGAAGGAA CAGGAAGCGA TGCCAGCCTT GTGGTTTTAC CCGTCAAGGA
  CAGTCTCACC AGAAGCCCCT CCTTTGTGGT CTTGGCGTTC ATCAAGGATG GATTCCCCTG
  GGACTCTACC CTTACGACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157055	NES08477045	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917423					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157055	NES08477045	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75466619 () rs orientation: forward

Symbol	Name	Function Class
Rr402731	regulatory region 402731	34 bp upstream
Rr451211	regulatory region 451211	1969 bp distal
Rr451213	regulatory region 451213	within coordinates
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	979 bp upstream
Tssr102986	transcription start site region 102986	1097 bp upstream
Tssr102987	transcription start site region 102987	1144 bp upstream
Tssr102988	transcription start site region 102988	1223 bp upstream
Tssr102989	transcription start site region 102989	1297 bp upstream
Tssr102990	transcription start site region 102990	1334 bp upstream