rs26917459 SNP Detail

Summary

• ID
  rs26917459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75456674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACACAGA GACACCCTGT
  CTTAAAAAAG ACAAAACGGG GGGCGGAGGG GGATGGAAAT CCTGATACAC TCCCACAATC
  TCAGGGACTA GACAGAGTGA GGCAGGAAGA TTATGATTTT GAGTCCAGTT TGGCTACACA
  GTAAAACCTT ATCTAAAAAA ACAAAACAAA CAAAAAAAGT GTCAGCTTCA AGAAGTAGAG
  R
  GCTCAGGAGA AGAAGTCTGG AGTAGAGTAG ACAAGCACTG TATTCCCCTA GTCTCCAGCA
  TCCAGTACTC ACAGGCCTGG CTCTGCTCAG AAGGGCTGCC CTGGGTCAGG GAGCTGAAGG
  AAGAAGCCTG GCTGTCTAGG GAGACTTGTG GTGTCAGATG ACTGTGTGCC TGGCACAGAT
  CCTCTGACCT TTCCTTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157091	NES08477167	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917459					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157091	NES08477167	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75456674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			1954 bp distal
Rr451208	regulatory region 451208			1162 bp distal
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102978	transcription start site region 102978			1011 bp upstream