rs26917460 SNP Detail

Summary

• ID
  rs26917460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75456332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGAGAT GTGGTAGACT
  AGGCTGGCAT GGGACTTACT TGGTAGACAG GGTTGGCTTC AGACAGTAGG TGGTCCTCCT
  GTCTCAGCCC GGGACTGGAA CTACGTCACA CGCAGCTTAA TCTTCTGGTA TTTCACTGAA
  ATAAAAAAAC CTTTCGATGG GACCAACTCA GCAGGAAGAG ATGCTTGCTG CTAGCGTGGA
  R
  GTAGCACACA GTGGTCAGGA GTTGGTTCTC TTCTTCCCCT GTGCATTCAA TATCCAGCAC
  TCAGGTGGCA GAGGCAGGTG AATCTCTGTG GGTTCAAGGC CAGCCTGGTC TACAGAGCGA
  ATTTTATCTA GGGTAGCCAT GGCTACACAG AGACACCCTG TCTTAAAAAA GACAAAACGG
  GGGGCGGAGG GGGATGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37157092	NES08477209	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26917460					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157092	NES08477209	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75456332 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			1612 bp distal
Rr451208	regulatory region 451208			820 bp distal
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102977	transcription start site region 102977			1840 bp downstream
Tssr102978	transcription start site region 102978			1353 bp upstream