rs26917468 SNP Detail

Summary

• ID
  rs26917468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75454617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGAGCCTTC GTCCCTTCCC CAGGCCCTGG GTGCTGGATG GGCCATATTT CCTGAACCTG
  AGCTTTATGC CTTCTTCCCA CAGCGGCCCC ATCGTTTATG CACAGTGTGT TCAGCCCCCT
  CCTGGTGCTC AGCCTGGTCA CCATGTGTGT CACACAGCTG CGACTTATCT TCTACATGGG
  GGCTATGAAC AGCATCCTTG AGTTCCTGGT CAGGGGGGAC CAGAAGACAG GTAAGTGTCC
  CCCACTACAC ACACACACAC ACACACACAC ACACACATAC CTCTGGGCCT TCCTTGATGC
  R
  TCCCTCCAGG GTAGGGCAGT GCTGCTACTC TCACCAGCCC AATAAAGCCC TCCGTCCCCT
  CCAGCTTACG TACTTTGTGA CCTAGATCAC ATCAGTAGGG CTGTGAAGTT GCCGTGTCTG
  AGGCCCTGCT GGCTTGTCTT GTCACGGCCA GCTTGACTGT TCTTTCATGT CCCCATCAGG
  GTTTTCCCGG CTAAGGAGGG AGAGGACTGA AATAGCGCTG TGTTTCGGGT GTGGGGTGAA
  TGCTTTCAGT GCCAGTGGGG AGGGCTGCGG GCTGTCTGCT GAGAACACGA CCCAGAGCCG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37157100	NES08477237	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	A	G		G	G	A	G		A
ss38758404	mCV22729108	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss132438505	ENSMUSSNP6995381	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss323751020	CHEV_11_75377293	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26917468					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37157100	NES08477237	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75454617 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			within coordinates
Rr451206	regulatory region 451206			1872 bp distal
Rr451207	regulatory region 451207			1018 bp distal
Rr451208	regulatory region 451208			within coordinates
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102977	transcription start site region 102977			125 bp downstream