rs26917906 SNP Detail

Summary

• ID
  rs26917906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72852569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCCTGCAA TCCTTAGCCC ATTTTATCCC AGAGCCTTAC
  TGGATGCCCG CACCTGCTGT GCGATCTGCG GACACCCTGC AAGTGCAGAC GCTTGAGGCC
  Y
  TCTAGCCAGC GACTCCGAGG CCCAACCTAT CAGGGGGTTC CGATGTCTCC CCGGAAGGTT
  CACTAAGGCG CCCAAGACGG TGCAGCCTGT CAGCTGTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	PWD/PhJ
ss37160249	NES08480002	PERLEGEN	MM_PANEL2	f	SNP	C	C		T
ss132417987	ENSMUSSNP6141660	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	PWD/PhJ
rs26917906					SNP	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37160249	NES08480002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72852569 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	within coordinates
Cpgi3227	CpG island 3227	within coordinates
Rr402707	regulatory region 402707	1945 bp upstream
Rr450779	regulatory region 450779	1289 bp distal
Rr450780	regulatory region 450780	564 bp distal
Rr450781	regulatory region 450781	within coordinates
Rr450782	regulatory region 450782	912 bp proximal
Tssr102861	transcription start site region 102861	1448 bp downstream
Tssr102862	transcription start site region 102862	564 bp downstream
Tssr102863	transcription start site region 102863	515 bp downstream