rs26922299 SNP Detail

Summary

• ID
  rs26922299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:66988936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCAAGC CGAGCTGGAG
  GCAGCTCTCA AGGAATCCCG GTCCTTGAGC ACTGAGCTCT TCAAACTGAA GAATGCCTAT
  GAAGAAGCCT TGGATCAACT TGAAACCGTG AAACGGGAGA ATAAGAACTT AGAACGTAAG
  CCTTTCCGAA CTGTCCGAGG TTGTGGGAAA CCCTTCTTGT CACCCATCGT GGCCAGAGTG
  Y
  GTGAGGGTGG ATGAGACTCT GTTATTCAAG CTCCTCTACA TGGGTCTGCT GATGCACCAA
  TAGAAACTGT TCACTGTTGA CAAGTTGGTT TTTCTTAAAG ATCTATCTAT CTATCTATCT
  ATCTATCTAT CTATCTATCT ATCTATCTAA TTTATATGGG TACGTTCTCT TCAGACACAC
  CAGAAGAGGG CATGAGATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37173135	NES08486813	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C		C	T	T	T		C
ss323718355	CHEV_11_66911612	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26922299					SNP	T	T	T	T	T	C	T	C	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37173135	NES08486813	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:66988936 () rs orientation: forward

Symbol	Name	Function Class
Mir6923	microRNA 6923	1694 bp upstream
Myh3	myosin, heavy polypeptide 3, skeletal muscle, embryonic	Intron
Tssr102156	transcription start site region 102156	162 bp downstream
Tssr102157	transcription start site region 102157	458 bp upstream