rs26922315 SNP Detail

Summary

• ID
  rs26922315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:66987670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAAAAT GTAACCGAAC
  GAATTCAGTT CATTCAGACA CCAGCTTTGA TCCTGGTTAG ACCGGAGAAA GGCCATTGAT
  CACAGACTCT GAGCAGATGG GGGCATTCTC TTAAGGTTTA CGAGCAGAGG TGTGTGAGCC
  ACGCGGTTGG TATCTCCAGC TTGGTGAGCA GTGATGCTCG TGGAGAAGAT TGAAACTTAA
  Y
  GACATCAGCT TTCTTCTCGT TTTCTTGAAG AAAAAAGCTT GCGCAGCGCC TTCAGGATTC
  GGAGGAGCAG GTAGAGGCTG TAAATGCCAA ATGTGCTTCC TTGGAAAAGA CCAAGCAGAG
  GCTGCAAGGG GAGGTGGAGG ACCTGATGGT GGATGTGGAA AGAGCCAACT CCCTGGCTGC
  CGCTCTGGAC AAGAAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37173151	NES08486865	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		T	T	C
ss323718338	CHEV_11_66910346	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26922315					SNP	T	T	T	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37173151	NES08486865	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:66987670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3064	CpG island 3064	1919 bp distal
Myh3	myosin, heavy polypeptide 3, skeletal muscle, embryonic	within coordinates
Tssr102156	transcription start site region 102156	1050 bp upstream
Tssr102157	transcription start site region 102157	1724 bp upstream