rs26922320 SNP Detail

Summary

• ID
  rs26922320
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:66987439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGCCAA CAGCGAGGTG
  GCCCAGTGGA GGACCAAGTA TGAAACGGAT GCCATCCAGC GCACGGAGGA GCTGGAGGAG
  GCCAAGTATG TGTCTCTAAT TAGAACGCTT AAGGGATCTC ATAGCTTAGC ACACTGGCTC
  TAGAGTGACT CAGGGATGAA TCTAAAGAGT GAATTTGATT TGTTTCTCAA GATTTCCCCA
  K
  CAAGGAGTCT TTAAATGTAA CACTGGCTGA AATGTAAAAT GTAACCGAAC GAATTCAGTT
  CATTCAGACA CCAGCTTTGA TCCTGGTTAG ACCGGAGAAA GGCCATTGAT CACAGACTCT
  GAGCAGATGG GGGCATTCTC TTAAGGTTTA CGAGCAGAGG TGTGTGAGCC ACGCGGTTGG
  TATCTCCAGC TTGGTGAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37173156	NES08486860	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26922320					SNP	T	T	T	T	T	T	T	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37173156	NES08486860	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:66987439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3064	CpG island 3064	1688 bp distal
Myh3	myosin, heavy polypeptide 3, skeletal muscle, embryonic	within coordinates
Tssr102156	transcription start site region 102156	1281 bp upstream
Tssr102157	transcription start site region 102157	1955 bp upstream