rs26922499 SNP Detail

Summary

• ID
  rs26922499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69493746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCAGAACC CCATTATCAG GTTGCTCATA ATATCGCCCT
  GGACGGCAGA CATCATTCTT CTGTGCTTGG ATGGAGTCGT TGTAAGCTAG GAGGTGGGAG
  R
  CAGACAGAGA AGGTCAGAGG CCAAATGTCT CACTTCCAGG GTCCTGGATT CCTTCCCCCA
  AGGTCCTGGA CTAGCCCCAC ACTCACGTTC CAAGAACTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37167036	NES08484098	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G			G		G	G	A
ss38808805	mCV23357651	ABI	CRAMUS_MOUSE	f	SNP		G				G	A
ss323730643	CHEV_11_69416422	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26922499					SNP	G	G	G	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167036	NES08484098	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69493746 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Cpgi3137	CpG island 3137	1771 bp proximal
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	1464 bp downstream
Rr450036	regulatory region 450036	1435 bp proximal
Tssr102488	transcription start site region 102488	1717 bp downstream
Tssr102489	transcription start site region 102489	1671 bp downstream
Tssr108726	transcription start site region 108726	1955 bp upstream
Tssr108727	transcription start site region 108727	1934 bp upstream
Tssr108728	transcription start site region 108728	1890 bp upstream
Tssr108729	transcription start site region 108729	1805 bp upstream
Tssr108730	transcription start site region 108730	1773 bp upstream
Tssr108731	transcription start site region 108731	1731 bp upstream
Tssr108732	transcription start site region 108732	1670 bp upstream
Tssr108733	transcription start site region 108733	455 bp upstream
Tssr108734	transcription start site region 108734	137 bp upstream
Tssr108735	transcription start site region 108735	88 bp upstream
Tssr108736	transcription start site region 108736	60 bp upstream
Tssr108737	transcription start site region 108737	618 bp downstream