rs26922500 SNP Detail

Summary

• ID
  rs26922500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69493643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTG AACTGGCAGG CACGTTTTGG
  R
  TAGTTCAGAA CCCCATTATC AGGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37167037	NES08484097	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G		G	G	A
ss323730642	CHEV_11_69416319	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26922500					SNP	G	G	G	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167037	NES08484097	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69493643 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Cpgi3137	CpG island 3137	1874 bp proximal
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	1361 bp downstream
Rr450036	regulatory region 450036	1538 bp proximal
Tssr102488	transcription start site region 102488	1614 bp downstream
Tssr102489	transcription start site region 102489	1568 bp downstream
Tssr108724	transcription start site region 108724	1976 bp upstream
Tssr108725	transcription start site region 108725	1954 bp upstream
Tssr108726	transcription start site region 108726	1852 bp upstream
Tssr108727	transcription start site region 108727	1831 bp upstream
Tssr108728	transcription start site region 108728	1787 bp upstream
Tssr108729	transcription start site region 108729	1702 bp upstream
Tssr108730	transcription start site region 108730	1670 bp upstream
Tssr108731	transcription start site region 108731	1628 bp upstream
Tssr108732	transcription start site region 108732	1567 bp upstream
Tssr108733	transcription start site region 108733	352 bp upstream
Tssr108734	transcription start site region 108734	34 bp upstream
Tssr108735	transcription start site region 108735	within coordinates
Tssr108736	transcription start site region 108736	31 bp downstream
Tssr108737	transcription start site region 108737	721 bp downstream