rs26922501 SNP Detail

Summary

• ID
  rs26922501
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69492324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGTATAG TTTACCTGGG CCAGGAGAAG AAAAAAACGT
  AAGCCTCTGG TACCTTGGCG TCTTTCCCAA GAACACCATT TTTTCATTCA GGAGCCACCG
  W
  CAAGGACCTT CCGAGGTGGG ACTTACATGG AACTTTTTGC CATAGTAGGG AAAGTACATC
  AGATCAATGC TGCCATTAGC AGGGAACATG ACAAAGTGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37167038	NES08484095	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T			T		T	T	A
ss38860484	mCV23357640	ABI	CRAMUS_MOUSE	f	SNP		T				T	A
ss132359146	ENSMUSSNP1781888	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					A
ss323730639	CHEV_11_69415000	CHEVERUD	SCREENING_POP	f	SNP									T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26922501					SNP	T	T	T	T	T	T	A	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167038	NES08484095	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69492324 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide			Intron
				Noncoding-Transcript-Variant
Rr386229	regulatory region 386229			42 bp downstream
Rr450033	regulatory region 450033			1759 bp distal
Rr450034	regulatory region 450034			1888 bp distal
Rr450035	regulatory region 450035			836 bp distal
Tssr3544	transcription start site region 3544			794 bp upstream
Tssr102487	transcription start site region 102487			1458 bp downstream
Tssr102488	transcription start site region 102488			295 bp downstream
Tssr102489	transcription start site region 102489			249 bp downstream
Tssr108712	transcription start site region 108712			1480 bp upstream
Tssr108713	transcription start site region 108713			1329 bp upstream
Tssr108714	transcription start site region 108714			1261 bp upstream
Tssr108715	transcription start site region 108715			1227 bp upstream
Tssr108716	transcription start site region 108716			923 bp upstream
Tssr108717	transcription start site region 108717			909 bp upstream
Tssr108718	transcription start site region 108718			845 bp upstream
Tssr108719	transcription start site region 108719			843 bp upstream
Tssr108720	transcription start site region 108720			827 bp upstream
Tssr108721	transcription start site region 108721			818 bp upstream
Tssr108722	transcription start site region 108722			740 bp upstream
Tssr108723	transcription start site region 108723			703 bp upstream
Tssr108724	transcription start site region 108724			657 bp upstream
Tssr108725	transcription start site region 108725			635 bp upstream
Tssr108726	transcription start site region 108726			533 bp upstream
Tssr108727	transcription start site region 108727			512 bp upstream
Tssr108728	transcription start site region 108728			468 bp upstream
Tssr108729	transcription start site region 108729			383 bp upstream
Tssr108730	transcription start site region 108730			351 bp upstream
Tssr108731	transcription start site region 108731			309 bp upstream
Tssr108732	transcription start site region 108732			248 bp upstream
Tssr108733	transcription start site region 108733			954 bp downstream
Tssr108734	transcription start site region 108734			1245 bp downstream
Tssr108735	transcription start site region 108735			1312 bp downstream
Tssr108736	transcription start site region 108736			1350 bp downstream