rs26922502 SNP Detail

Summary

• ID
  rs26922502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG TCGCTGAGTG ACAACTCCGG
  Y
  TCCCGAACTA GAAAACTCCC GACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss37167039	NES08484094	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C		C
ss132359142	ENSMUSSNP450560	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss323730638	CHEV_11_69414510	CHEVERUD	SCREENING_POP	f	SNP						C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs26922502					SNP	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167039	NES08484094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491834 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	1269 bp distal
Rr450034	regulatory region 450034	1398 bp distal
Rr450035	regulatory region 450035	346 bp distal
Tssr3544	transcription start site region 3544	304 bp upstream
Tssr102487	transcription start site region 102487	968 bp downstream
Tssr102488	transcription start site region 102488	155 bp upstream
Tssr102489	transcription start site region 102489	230 bp upstream
Tssr108712	transcription start site region 108712	990 bp upstream
Tssr108713	transcription start site region 108713	839 bp upstream
Tssr108714	transcription start site region 108714	771 bp upstream
Tssr108715	transcription start site region 108715	737 bp upstream
Tssr108716	transcription start site region 108716	433 bp upstream
Tssr108717	transcription start site region 108717	419 bp upstream
Tssr108718	transcription start site region 108718	355 bp upstream
Tssr108719	transcription start site region 108719	353 bp upstream
Tssr108720	transcription start site region 108720	337 bp upstream
Tssr108721	transcription start site region 108721	328 bp upstream
Tssr108722	transcription start site region 108722	250 bp upstream
Tssr108723	transcription start site region 108723	213 bp upstream
Tssr108724	transcription start site region 108724	167 bp upstream
Tssr108725	transcription start site region 108725	145 bp upstream
Tssr108726	transcription start site region 108726	43 bp upstream
Tssr108727	transcription start site region 108727	22 bp upstream
Tssr108728	transcription start site region 108728	11 bp downstream
Tssr108729	transcription start site region 108729	98 bp downstream
Tssr108730	transcription start site region 108730	130 bp downstream
Tssr108731	transcription start site region 108731	161 bp downstream
Tssr108732	transcription start site region 108732	222 bp downstream
Tssr108733	transcription start site region 108733	1444 bp downstream
Tssr108734	transcription start site region 108734	1735 bp downstream
Tssr108735	transcription start site region 108735	1802 bp downstream
Tssr108736	transcription start site region 108736	1840 bp downstream