rs26936046 SNP Detail

Summary

• ID
  rs26936046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67857040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC AGAGAGCCGG GGTTGACGCG
  Y
  TTCCATTCCC TGGGAAAATG TTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
ss37170378	NES08496251	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T			C			C		C
ss38752537	mCV22349569	ABI	CRAMUS_MOUSE	f	SNP		T	T			T	C
ss132335745	ENSMUSSNP6445772	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C			C
ss323722468	CHEV_11_67779716	CHEVERUD	SCREENING_POP	f	SNP									C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
rs26936046					SNP	T	T	T	T	T	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37170378	NES08496251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67857040 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	563 bp upstream
Cpgi3072	CpG island 3072	535 bp distal
Cpgi3073	CpG island 3073	110 bp proximal
Rr449568	regulatory region 449568	1898 bp distal
Rr449569	regulatory region 449569	within coordinates
Rr449570	regulatory region 449570	277 bp proximal
Stx8	syntaxin 8	197 bp upstream
Tssr102288	transcription start site region 102288	228 bp upstream
Tssr108559	transcription start site region 108559	584 bp upstream
Tssr108560	transcription start site region 108560	551 bp upstream